Christina Theodoris

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New activity in ctheodoris/Geneformer 10 days ago

Setting max_layers_to_freeze overrun in MTLClassifier

5

#581 opened 13 days ago by

MajorasMeow

Update geneformer/mtl/train.py

1

#582 opened 11 days ago by

MajorasMeow

New activity in ctheodoris/Geneformer 12 days ago

A MTLClassifier.load_and_evaluate_test_model error

➕ 1

1

#580 opened 15 days ago by

c57bl6j

New activity in ctheodoris/Geneformer 22 days ago

Issue reproducing TTN detection counts in In Silico Treatment Analysis

1

#579 opened 25 days ago by

LucasACyyy

New activity in ctheodoris/Geneformer 26 days ago

Genecorpus 30 M annotation

1

#578 opened 27 days ago by

lorenzocampini

New activity in ctheodoris/Geneformer about 1 month ago

GPU requirements

1

#577 opened about 1 month ago by

lorenzocampini

Considerations on Gene symbol and Ensembl ID mapping

1

#576 opened about 1 month ago by

lorenzocampini

New activity in ctheodoris/Geneformer about 2 months ago

Ensembl gene ID version used in Geneformer (ENSG)

1

#575 opened about 2 months ago by

jenny143

use geneformer for mouse data

2

#574 opened about 2 months ago by

jenny143

New activity in ctheodoris/Geneformer 2 months ago

Clarification on label mapping for cardiomyopathy classifier (nf, dcm, hcm)

1

#571 opened 3 months ago by

ro2h5

New activity in ctheodoris/Genecorpus-30M 2 months ago

median computation

1

#26 opened about 1 year ago by

shakeel604

New activity in ctheodoris/Geneformer 2 months ago

problem with get_train_sampler()

1

#572 opened 3 months ago by

scsrsao

problem when running gene_classification.ipynb

2

#573 opened 2 months ago by

jenny143

New activity in ctheodoris/Geneformer 3 months ago

Genecorpus-95M availability

3

#526 opened 10 months ago by

ZhexuanLiu

Clarification on tuning "frozen layers" hyperparameter with RayTune

1

#570 opened 3 months ago by

ro2h5

TypeError in classifier.py

1

#568 opened 3 months ago by

ro2h5

Fix TypeError in make_perturbation_batch_special

1

#567 opened 4 months ago by

so298

Embedding bulk RNA-seq

1

#569 opened 3 months ago by

lorenzocampini

New activity in ctheodoris/Geneformer 4 months ago

Finetuning vs Pretraining Speed

2

#566 opened 4 months ago by

yqsu95

Bug in tokenizer.py: tokenize_loom

1

#565 opened 4 months ago by

yqsu95