Add BioCLIP 2.5 embeddings and benchmark artifacts
Browse files
bioclip2_5_benchmark/summary_20260326_185250.md
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# Full Benchmark: bioclip2_5
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- Timestamp: 20260326_185250
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- Samples: 139,067
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- Classes: 60
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- Reductions requested: tsne, umap, pca
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- Reductions completed: tsne, umap, pca
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- Clustering: hdbscan, dbscan, hierarchical, gmm
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## Skipped Clustering Runs
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- tsne + hierarchical (hierarchical_k60): skipped: n_samples=139067 exceeds max_samples_hierarchical=50000
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- umap + hierarchical (hierarchical_k60): skipped: n_samples=139067 exceeds max_samples_hierarchical=50000
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- pca + hierarchical (hierarchical_k60): skipped: n_samples=139067 exceeds max_samples_hierarchical=50000
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## Top Results by V-Measure
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| Rank | Reduction | Clustering | Config | V-Measure | AMI | ARI | Outlier % |
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|---:|---|---|---|---:|---:|---:|---:|
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| 1 | tsne | hdbscan | hdbscan_mcs150_ms50 | 0.8822 | 0.8814 | 0.7963 | 13.59 |
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| 2 | umap | hdbscan | hdbscan_mcs150_ms50 | 0.8590 | 0.8580 | 0.7149 | 15.28 |
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| 3 | umap | dbscan | dbscan_relaxed_ms20 | 0.7992 | 0.7971 | 0.4547 | 6.28 |
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| 4 | tsne | gmm | gmm_k60 | 0.7735 | 0.7728 | 0.5789 | 0.00 |
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| 5 | umap | gmm | gmm_k60 | 0.7727 | 0.7720 | 0.5476 | 0.00 |
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| 6 | tsne | dbscan | dbscan_relaxed_ms20 | 0.7717 | 0.7693 | 0.2577 | 2.90 |
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| 7 | pca | gmm | gmm_k60 | 0.3244 | 0.3223 | 0.0944 | 0.00 |
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| 8 | pca | hdbscan | hdbscan_mcs150_ms50 | 0.1804 | 0.1802 | 0.0130 | 1.06 |
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| 9 | pca | dbscan | dbscan_relaxed_ms20 | 0.0091 | 0.0056 | 0.0000 | 4.97 |
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## Artifact Paths
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- CSV: C:\Users\Hugo\Documents\zeroshot_clustering_animal_images\results\benchmark_bioclip2_5_full_20260326_185250\benchmark_results.csv
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- JSON: C:\Users\Hugo\Documents\zeroshot_clustering_animal_images\results\benchmark_bioclip2_5_full_20260326_185250\benchmark_results.json
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- Reductions: C:\Users\Hugo\Documents\zeroshot_clustering_animal_images\outputs\reductions
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- Clustering: C:\Users\Hugo\Documents\zeroshot_clustering_animal_images\outputs\clustering
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